Checking directory of LIBXML_INCDIR I have libxml2 version 2.9.9-2 installed with cmake 3.15.4 on my Manjaro system. Asking for help, clarification, or responding to other answers. [ 23%] Building C object CMakeFiles/iio.dir/utilities.c.o which indicates to me that /usr/lib/x86_64-linux-gnu/pkgconfig is already in the default path for pkg-config. i have tried to install libxml2 with $ brew install libxml but its says Warning: libxml2-2.9.3 already installed. Ubuntu 14.04 configure: error: "libxml not found". * checking for gcc gcc Can my creature spell be countered if I cast a split second spell after it? [ 30%] Building C object CMakeFiles/iio.dir/xml.c.o [ 27%] Building C object CMakeFiles/iio.dir/network.c.o Then running pkg-config --variable pc_path pkg-config gives (my highlighting): /usr/local/lib/x86_64-linux-gnu/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/share/pkgconfig:/usr/lib/x86_64-linux-gnu/pkgconfig:/usr/lib/pkgconfig:/usr/share/pkgconfig. to your account. Hi, im getting this on installation, not sure how to resolve, could CMakeFiles/Makefile2:67: recipe for target 'CMakeFiles/iio.dir/all' failed rev2023.4.21.43403. I installed libxml2 with brew and checked a lot of articles, but nothing helped so far. How to check for #1 being either `d` or `h` with latex3? Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. In your case, you are probably missing the libxml2-dev package. What differentiates living as mere roommates from living in a marriage-like relationship? Does a password policy with a restriction of repeated characters increase security? By clicking Sign up for GitHub, you agree to our terms of service and -- Looking for sys/types.h - found What is scrcpy OTG mode and how does it work? Can someone explain why this point is giving me 8.3V? https://webkaru.net/linux/configure-error-xml2-config-found-please-check-libxml2-installation/. You signed in with another tab or window. -- Check for working C compiler: /usr/bin/cc -- works -- Doxygen not found, API documentation won't be generated How can I control PNP and NPN transistors together from one pin? configure: error: xml2-config not found. no checking for xmlParseFile in -lxml. What is the Russian word for the color "teal"? Scanning dependencies of target iio thanks, which can be solved by installing, thanks, actually my issue was PKG_CONFIG_PATH wasn't setup correctly. directories. Ubuntu 14.04 configure: error: "libxml not found" -- Performing Test HAS_PIPE2 pthread library not found; support for threads will be disabled. [ 19%] Building C object CMakeFiles/iio.dir/buffer.c.o USE_XML2 = yes So I'm not sure if this correct behaviour, since the libxml & libusb are both in the sysroot specified in the cmake line. Connect and share knowledge within a single location that is structured and easy to search. Already on GitHub? from /usr/include/libxml2/libxml/tree.h:1307, Connect and share knowledge within a single location that is structured and easy to search. of the following names: Add the installation prefix of "Python" to CMAKE_PREFIX_PATH or set English version of Russian proverb "The hedgehogs got pricked, cried, but continued to eat the cactus", How to convert a sequence of integers into a monomial. [ 8%] Building C object CMakeFiles/iio.dir/device.c.o To my unluck, i ran into following errors: The quick solution to the above problem is you need to install libxml2-devel package. -- Generating done How a top-ranked engineering school reimagined CS curriculum (Ep. Could a subterranean river or aquifer generate enough continuous momentum to power a waterwheel for the purpose of producing electricity? @pcercuei correct me if I'm wrong here, but we don't really do anything special with libxml2 in cmake but rely on find_package. checking for gcc option to accept ISO C89 none needed Acoustic plug-in not working at home but works at Guitar Center, Short story about swapping bodies as a job; the person who hires the main character misuses his body. Find centralized, trusted content and collaborate around the technologies you use most. Checking Irreducibility to a Polynomial with Non-constant Degree over Integer. Installing R package XML on MacOS 10.13.6 Upgrade Node.js to the latest version on Mac OS, Incompatible library version: nokogiri.bundle requires version 8.0.0 or later, but libiconv.2.dylib provides version 7.0.0, "code ." 2019/07/20 configure: error: libxml2 not found. Warning message: Can someone explain why this point is giving me 8.3V? Located parser file /home/***/anaconda3/include/libxml2//parser.h make: *** [all] Error 2. sorry for going dark on this one, I realized it was probably a problem with cmake or some other component. make[2]: *** [CMakeFiles/iio.dir/xml.c.o] Error 1. # Install XML What to do? How a top-ranked engineering school reimagined CS curriculum (Ep. [ 15%] Building C object CMakeFiles/iio.dir/context.c.o It seems that R is picking up the libxml2 installation from Anaconda. 2. xml2 installed but not found during compilation. I have tried upgrading to 16.x but the upgrade process fails with errors need to zoom in into that another time. [9] LC_ADDRESS=C LC_TELEPHONE=C Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Checking directory of LIBXML_INCDIR Located parser file /opt/lampp/include/parser.h Checking for 1.8: /opt/lampp/include Using libxml2. How to combine several legends in one frame? https://packages.ubuntu.com/focal/pgmodeler. I'm hitting other issues now, will post a separate question if I can't work round these. No package 'libxml-2.0' found Consider adjusting the PKG_CONFIG_PATH environment variable if you installed software in a non-standard prefix. how to specify which R lib to use when installing a R package? #include checking for suffix of executables The best answers are voted up and rise to the top, Not the answer you're looking for? -- Configuring done from /usr/include/libxml2/libxml/xmlmemory.h:218, During the ./configure it will produce the following error: However I do have libxslt installed, e.g. The header files and library seem to be -- Performing Test WITH_NETWORK_EVENTFD - Success It only takes a minute to sign up. no checking for xmlParseFile in -lxml. The error message suggested configure: error: "libxml not found", but. Please check your libxml2 installation. /usr/local/Cellar/libxml2/2.9.3/lib/pkgconfig and /usr/local/Library/ENV/pkgconfig/. If "Python" Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site. [CentOS Stream 8]: Unknown repo crb : [Solved], Failed to download metadata for repo AppStream [CentOS], git push using GitHub token [Deprecating password authentication], Book Tatkal tickets fast using Tatkal for Sure App. Now this wont work. -- Looking for newlocale - found I've tried to run with & without "/bin" in the PATH and get the same results. Like "libxml2-devel". checking whether we are using the GNU C compiler yes > biocLite("XML") [ 34%] Building C object CMakeFiles/iio.dir/local.c.o Thanks for contributing an answer to Ask Ubuntu! You signed in with another tab or window. [SOLVED] libxml not found when installing XML package for R ), I had this issue with PHP 7.4 build from source on Ubuntu 16.04 which I fixed by using the same way for OSX suggested above + installing dev package for libxml2-dev. This doesn't work for me. On what basis are pardoning decisions made by presidents or governors when exercising their pardoning power? You can also subscribe without commenting. ^ Because configure it self is autogenerated from configure.ac using autotools, one patches configure.ac and can then run autoreconf. Already on GitHub? Configure failure, cannot find xsltproc Issue #1 dankamongmen Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Problems compiling libjingle/gtk+-2.0 for Mac OS X, XSP Configure fails due to mono module dependancy, Error libxml-2.0 not found when installing ggiraph, How to set path pygobject Macos catalina installing PyGTK, Having Trouble Downloading Tidyverse in R, "Signpost" puzzle from Tatham's collection. A freelance writer on latest trends in technology, gadget reviews, How to's and many more. no configure: error: "libxml not found" ERROR: configuration failed for package 'XML' from /usr/include/libxml2/libxml/threads.h:35, Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? [ 5%] Building C object CMakeFiles/iio.dir/channel.c.o [ 16%] Building C object CMakeFiles/iio.dir/utilities.c.o -- Check size of struct usb_functionfs_descs_head_v2 Tikz: Numbering vertices of regular a-sided Polygon, Embedded hyperlinks in a thesis or research paper. git clone https://github.com/analogdevicesinc/libiio.git Please check your libxml2 installation. Does a password policy with a restriction of repeated characters increase security? sequential (one-line) endnotes in plain tex/optex. -- Detecting C compile features -- Looking for strerror_r - found On whose turn does the fright from a terror dive end? Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. Checking for 1.8: /home/***/anaconda3/include/libxml2/ You are trying to use a version 2. Not the answer you're looking for? Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? BLAS: /home/kkarius/anaconda3/lib/R/lib/libRblas.so 2019/07/20 configure: error: libxml2 not found. Please check your With. Can't find ImageMagick with pkg-config on Ubuntu 16.04. Your post saved me, thank you! Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Pipe to/from the clipboard in a Bash script. Can the game be left in an invalid state if all state-based actions are replaced? Well occasionally send you account related emails. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, for libxml++2.6 sudo apt-get install libxml++2.6-dev. Learn more about Stack Overflow the company, and our products. Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? density matrix, Literature about the category of finitary monads. R version 3.4.1 (2017-06-30) To subscribe to this RSS feed, copy and paste this URL into your RSS reader. The problem in this case is the configure script incorrectly judges you to be using libxml 1 from parsing the include directory. checking whether we are cross compiling no @steeldriver Thanks - that answers my original question. In install.packages(pkgs = doing, lib = lib, ) : -- Found BISON: /usr/bin/bison (found version "3.0.4") Sign up for a free GitHub account to open an issue and contact its maintainers and the community. I had the same error but libxml2-dev was already installed so that didn't help. Why did DOS-based Windows require HIMEM.SYS to boot? Downloaded the latest stable version of php ie, 5.5.7 and started to compile. The problem is it's looking for libxml-2.0, not libxml2. I had already pkg-config installed but the path was pointing to correct location (AWS instance). DESeq2 . simplifying this part of the code base and improving error reporting. checking whether the C compiler works yes The best answers are voted up and rise to the top, Not the answer you're looking for? -- Detecting C compile features - done macos - configure script cannot find libxml2 on mac - Stack Overflow checking for suffix of object files o checking whether we are cross compiling no Because configure it self is autogenerated from configure.ac using autotools, How about saving the world? Why typically people don't use biases in attention mechanism? [ 11%] Building C object CMakeFiles/iio.dir/device.c.o How about saving the world? See the pkg-config man page for more details. rev2023.4.21.43403. https://download.gnome.org/sources/libxml2/2.11/libxml2-2.11.0.tar.xz (2.50M) checking for gcc option to accept ISO C89 none needed What positional accuracy (ie, arc seconds) is necessary to view Saturn, Uranus, beyond? What did help was to install libxml through conda using. LAPACK: /home/kkarius/anaconda3/lib/R/lib/libRlapack.so, locale: checking for pkg-config /usr/bin/pkg-config Refactoring has begun on some buffering and encoding code with the goal of Here are my steps and the results. cd build Making statements based on opinion; back them up with references or personal experience. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. -- Performing Test HAS_WPEDANTIC Problems install R XML package on CentOS 7 - Bioconductor Would you ever say "eat pig" instead of "eat pork"? checking for suffix of object files o PHP :: Bug #79135 :: checking whether to build with LIBXML support Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help "No package libxml-2.0 installed" - Linux Mint Forums It is possible though that large To reproduce your problem I installed Anaconda3 4.4.0 on RedHat 7.4, then: Use of this site constitutes acceptance of our User Agreement and Privacy Problems install R XML package on CentOS 7, Traffic: 580 users visited in the last hour, https://cran.rstudio.com/src/contrib/XML_3.98-1.9.tar.gz', https://cloud.r-project.org/src/contrib/XML_3.98-1.9.tar.gz, User Agreement and Privacy downloaded 1.5 MB, * installing *source* package XML Have a question about this project? CMake did not find one. -- Looking for pthread_setname_np - found However I do have libxslt installed, e.g. libxml2-dev What's the cheapest way to buy out a sibling's share of our parents house if I have no cash and want to pay less than the appraised value? * no >>configure: erroe: *** libxml >= 1. . Ask Ubuntu is a question and answer site for Ubuntu users and developers. Special thanks to Googles Open Source Security Subsidies program for What does the power set mean in the construction of Von Neumann universe? I made sure xml2 and libxml2 are installed (via sudo apt-get install) but that's not enough. Ah, so you're using Anaconda's R distribution. cd build -- Looking for sys/types.h but setting the config in the R environment doesn't help: UPDATE I already had libxml2 installed in the system see: Make sure your system has the libxml-dev or libxml2-dev package installed. So, why would I get "No package 'libxml2.0' found", and how might I fix this? Thanks for contributing an answer to Stack Overflow! Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. [ 11%] Building C object CMakeFiles/iio.dir/context.c.o Well occasionally send you account related emails. #include [root@catest php-5.5.7]# yum install libxml2-devel -- Build files have been written to: /home/patricaholden/williamson/testbuild/Pro3-Linux/packages/libiio/build, Just to point out - we already provide binaries for armhf (Raspbian Stretch & Raspbian Jessie), they are linked from the readme at: I think there is a problem with the environment variables when you install R through conda. conda install -c r r-xml. Using libxml2. With over 10 pre-installed distros to choose from, the worry-free installation life is here! checking whether gcc accepts -g yes So how can i add libxml-2.0.pc in /usr/lib/pkgconfig/. Platform: x86_64-pc-linux-gnu (64-bit) 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. so I'm trying to use pkg-config, as it suggests but then getting the new error: /app/INSTALL_FILES/pkg-config-.29.2 # ./configure --with-internal-glib but I get this error when I try 'make' command: # CC=gcc # export CC # make make Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? I've updated the README to explicitly mention this dependency. I suspect that libusb is also being found in /usr/lib. Why do men's bikes have high bars where you can hit your testicles while women's bikes have the bar much lower? homebrew installs libxml2 as "keg only" which means it is not symlinked to the normal /usr/local/include and /usr/local/lib directories which means nothing can find it without help. CMakeFiles/iio.dir/build.make:302: recipe for target 'CMakeFiles/iio.dir/xml.c.o' failed You can confirm this on your system by checking rpm -ql libxml2-devel | grep include | head -4 if also see the include files installed in /usr/include/libxml2/libxml. Futuristic/dystopian short story about a man living in a hive society trying to meet his dying mother. In order to get the libraries and header files necessary for compiling and building, there is usually a separate libXXX-dev package (-dev indicating that the packages are for development). Yes, the *-dev packages don't exist in Arch Linux, so I can't forget it. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. That will install the build dependencies for the btrfs-tools version in your package repository, rather than for the newer version you're trying to build.

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